Index

_

__cchdo_version__ (hydro.conformance.CCHDOnetCDF10 attribute) __geo_interface__ (hydro.accessors.GeoAccessor property) __getitem__() (hydro.accessors.WHPIndxer method) (hydro.tutorial.CCHDOBottleData method) __iter__() (hydro.tutorial.CCHDOBottleData method) __len__() (hydro.tutorial.CCHDOBottleData method) __post_init__() (hydro.exchange._ExchangeData method) _ascii() (in module hydro.legacy.coards) _bottle_get_errors() (in module hydro.exchange) _bottle_get_flags() (in module hydro.exchange) _bottle_get_params() (in module hydro.exchange) _cache_dir() (in module hydro.tutorial) _combine_dt_ndarray() (in module hydro.exchange) _create_common_variables() (in module hydro.legacy.coards) _ctd_get_header() (in module hydro.exchange) _dataarray_factory() (in module hydro.core) _ExchangeData (class in hydro.exchange)

_ExchangeInfo (class in hydro.exchange) _extract_numeric_precisions() (in module hydro.exchange) _EXWOCE_PARAMS (in module hydro.legacy.woce) _gen_fname() (hydro.accessors.MiscAccessor static method) _get_comments() (hydro.accessors.ExchangeAccessor method) _get_fill_locs() (in module hydro.exchange) _is_all_dataarray() (in module hydro.exchange) _is_valid_exchange_numeric() (in module hydro.exchange) _load_raw_exchange() (in module hydro.exchange) _make_ctd_headers() (hydro.accessors.ExchangeAccessor method) _make_data_block() (hydro.accessors.ExchangeAccessor method) _make_params_units_line() (hydro.accessors.ExchangeAccessor method) _np_data_block (hydro.exchange._ExchangeInfo property) _pad_station_cast() (in module hydro.legacy.coards) (in module hydro.legacy.woce) _raw_lines (hydro.exchange._ExchangeInfo attribute) _UNWRITTEN_COLUMNS (in module hydro.legacy.woce) _whpname_from_attrs() (hydro.accessors.ExchangeAccessor static method)

A

add_cdom_coordinate() (in module hydro.exchange) add_geometry_var() (in module hydro.exchange) add_level() (in module hydro.core) add_param() (in module hydro.core)

add_profile() (in module hydro.core) add_profile_level() (in module hydro.core) add_profile_type() (in module hydro.exchange) all_same() (in module hydro.exchange) ASTERISK_FLAG (in module hydro.legacy.woce)

B

BAD (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) BAD_TRIP (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) BOTTLE (hydro.exchange.FileType attribute)

BOTTLE_FILE_EXTENSION (in module hydro.legacy.woce) BOTTLE_FLAG_DESCRIPTION (in module hydro.legacy.woce) BOTTLE_FLAGS (in module hydro.legacy.woce) bottle_fname (in module hydro.tutorial) bottle_uri (in module hydro.tutorial) BOTTLE_ZIP_FILE_EXTENSION (in module hydro.legacy.coards) BTLNBR (in module hydro.core) (in module hydro.exchange)

C

cached_file_loader() (in module hydro.__main__) can_migrate() (hydro.migration.MigrationABC method) CASTNO (in module hydro.core) (in module hydro.exchange) cchdo_c_format_precision() (hydro.accessors.ExchangeAccessor static method) cchdo_loader() (in module hydro.__main__) CCHDO_VERSION (in module hydro.exchange) CCHDOAccessor (class in hydro.accessors) CCHDOAccessorBase (class in hydro.accessors) CCHDOBottleData (class in hydro.tutorial) CCHDOnetCDF (in module hydro.conformance) CCHDOnetCDF10 (class in hydro.conformance) cf_def (hydro.exchange.ExchangeBottleFlag property) (hydro.exchange.ExchangeCTDFlag property) (hydro.exchange.ExchangeSampleFlag property) (hydro.exchange.flags.ExchangeBottleFlag property) (hydro.exchange.flags.ExchangeCTDFlag property) (hydro.exchange.flags.ExchangeSampleFlag property) CHARACTER_PARAMETERS (in module hydro.legacy.woce) check_cf_version() (hydro.conformance.CCHDOnetCDF10 method) check_flags() (in module hydro.exchange) check_is_subset_shape() (in module hydro.exchange) check_sorted() (in module hydro.exchange) CheckOptions (class in hydro.exchange) CheckResult (class in hydro.conformance) CHROMA_IRREGULAR (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) CHROMA_MANUAL (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute)

cli (in module hydro.__main__) COLUMN_WIDTH (in module hydro.legacy.woce) columns_and_base_format() (in module hydro.legacy.woce) combine_bottle_time() (in module hydro.exchange) combine_dt() (in module hydro.exchange) comments (hydro.exchange._ExchangeData attribute) (hydro.exchange._ExchangeInfo property) comments_slice (hydro.exchange._ExchangeInfo attribute) compact_profile() (hydro.accessors.MiscAccessor method) convert() (in module hydro.__main__) convert_exchange() (in module hydro.__main__) convert_fortran_format_to_c() (in module hydro.legacy.woce) COORDS (in module hydro.core) (in module hydro.exchange) create_and_fill_data_variables() (in module hydro.legacy.coards) create_common_variables() (in module hydro.legacy.coards) create_new() (in module hydro.core) CTD (hydro.exchange.FileType attribute) CTD_FILE_EXTENSION (in module hydro.legacy.woce) CTD_FLAG_DESCRIPTION (in module hydro.legacy.woce) CTD_FLAGS (in module hydro.legacy.woce) ctd_headers (hydro.exchange._ExchangeInfo property) ctd_headers_slice (hydro.exchange._ExchangeInfo attribute) CTD_ZIP_FILE_EXTENSION (in module hydro.legacy.coards) (in module hydro.legacy.woce) CTDPRS (in module hydro.core) (in module hydro.exchange)

D

data (hydro.exchange._ExchangeInfo property) data_slice (hydro.exchange._ExchangeInfo attribute) DATE (in module hydro.core) (in module hydro.exchange) date_names (hydro.accessors.ExchangeAccessor attribute) define_attributes() (in module hydro.legacy.coards) define_dimensions() (in module hydro.legacy.coards) definition (hydro.exchange.ExchangeBottleFlag property) (hydro.exchange.ExchangeCTDFlag property) (hydro.exchange.ExchangeSampleFlag property) (hydro.exchange.flags.ExchangeBottleFlag property) (hydro.exchange.flags.ExchangeCTDFlag property) (hydro.exchange.flags.ExchangeSampleFlag property)

DESPIKED (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) DIMS (in module hydro.core) (in module hydro.exchange) DISCREPANCY (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) dtype_map (in module hydro.core)

E

EPOCH (in module hydro.legacy.coards) error (hydro.conformance.CheckResult attribute) error_cols (hydro.exchange._ExchangeData attribute) ERROR_NAME (in module hydro.accessors) error_precisions (hydro.exchange._ExchangeData attribute) ExchangeAccessor (class in hydro.accessors) ExchangeBOMError, [1] ExchangeBottleFlag (class in hydro.exchange) (class in hydro.exchange.flags) ExchangeCTDFlag (class in hydro.exchange) (class in hydro.exchange.flags) ExchangeDataColumnAlignmentError ExchangeDataError ExchangeDataFlagPairError, [1] ExchangeDataInconsistentCoordinateError, [1] ExchangeDataPartialCoordinateError, [1] ExchangeDataPartialKeyError, [1] ExchangeDuplicateKeyError, [1] ExchangeDuplicateParameterError, [1]

ExchangeEncodingError, [1] ExchangeEndDataError ExchangeError, [1] ExchangeFlaglessParameterError, [1] ExchangeFlagUnitError, [1] ExchangeInconsistentMergeType, [1] ExchangeIO (in module hydro.exchange) ExchangeLEError ExchangeMagicNumberError, [1] ExchangeOrphanErrorError, [1] ExchangeOrphanFlagError, [1] ExchangeParameterError ExchangeParameterUndefError, [1] ExchangeParameterUnitAlignmentError, [1] ExchangeRecursiveZip ExchangeSampleFlag (class in hydro.exchange) (class in hydro.exchange.flags) exp_stn_cast (in module hydro.tests.test_accessors) EXPOCODE (in module hydro.core) (in module hydro.exchange)

F

FILE_EXTENSION (in module hydro.legacy.coards) file_type (hydro.accessors.ExchangeAccessor property) FileType (class in hydro.exchange) FILL_VALUE (in module hydro.legacy.coards) (in module hydro.legacy.woce) FILLS_MAP (in module hydro.core) (in module hydro.exchange) finalize() (hydro.exchange._ExchangeInfo method) finalize_ancillary_variables() (in module hydro.exchange)

flag_cols (hydro.exchange._ExchangeData attribute) flag_description() (in module hydro.legacy.woce) FLAG_NAME (in module hydro.accessors) FLAG_SCHEME (in module hydro.core) (in module hydro.exchange) flags (hydro.exchange.CheckOptions attribute) flatten_cdom_coordinate() (in module hydro.exchange) FORMAT (in module hydro.conformance) from_lines() (hydro.exchange._ExchangeInfo class method)

G

gen_complete_bottle() (in module hydro.exchange.helpers) gen_fname() (hydro.accessors.MiscAccessor method) GeoAccessor (class in hydro.accessors) GEOMETRY_VARS (in module hydro.exchange) get_exwoce_params() (in module hydro.legacy.woce) get_filename() (in module hydro.legacy.coards) (in module hydro.legacy.woce)

GOOD (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute)

H

has_value (hydro.exchange.ExchangeBottleFlag property) (hydro.exchange.ExchangeCTDFlag property) (hydro.exchange.ExchangeSampleFlag property) (hydro.exchange.flags.ExchangeBottleFlag property) (hydro.exchange.flags.ExchangeCTDFlag property) (hydro.exchange.flags.ExchangeSampleFlag property) hydro module hydro.__main__ module hydro.__main_helpers module hydro._version module hydro.accessors module hydro.conformance module hydro.convert module hydro.core module hydro.exchange module hydro.exchange.exceptions module hydro.exchange.flags module hydro.exchange.helpers module

hydro.legacy module hydro.legacy.coards module hydro.legacy.woce module hydro.migration module hydro.rename module hydro.tests module hydro.tests.conftest module hydro.tests.data module hydro.tests.test_accessors module hydro.tests.test_core_ops module hydro.tests.test_exchange module hydro.tests.test_merge module hydro.tests.test_rename module hydro.tutorial module

I

INTERPOLATED (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute)

is_not_none() (in module hydro.rename) (in module hydro.tests.test_rename) iter_errors() (hydro.conformance.CCHDOnetCDF10 method)

L

LATITUDE (in module hydro.core) (in module hydro.exchange) LEAKING (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) LegacyFormatAccessor (class in hydro.accessors) load_cchdo_bottle_data() (in module hydro.tutorial)

log (in module hydro.__main__) (in module hydro.conformance) (in module hydro.exchange) (in module hydro.legacy.coards) LONGITUDE (in module hydro.core) (in module hydro.exchange)

M

MatlabAccessor (class in hydro.accessors) MEAN (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) merge_fq() (hydro.accessors.MergeFQAccessor method) MergeFQAccessor (class in hydro.accessors) migrate() (hydro.migration.MigrationABC method) MigrationABC (class in hydro.migration) minutes_since_epoch() (in module hydro.legacy.coards) MiscAccessor (class in hydro.accessors) MISSING (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) module hydro hydro.__main__ hydro.__main_helpers hydro._version hydro.accessors hydro.conformance hydro.convert hydro.core hydro.exchange hydro.exchange.exceptions hydro.exchange.flags hydro.exchange.helpers hydro.legacy hydro.legacy.coards hydro.legacy.woce hydro.migration hydro.rename hydro.tests hydro.tests.conftest hydro.tests.data hydro.tests.test_accessors hydro.tests.test_core_ops hydro.tests.test_exchange hydro.tests.test_merge hydro.tests.test_rename hydro.tutorial

N

nc_empty() (in module hydro.tests.conftest) nc_placeholder() (in module hydro.tests.conftest) NO_INFO (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) NOFLAG (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) NON_FLOAT_PARAMETERS (in module hydro.legacy.coards)

NOT_REPORTED (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute) NOT_SAMPLED (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute)

O

ok (hydro.conformance.CheckResult property)

P

p_file() (in module hydro.__main_helpers) PAIR (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) param_cols (hydro.exchange._ExchangeData attribute) param_precisions (hydro.exchange._ExchangeData attribute)

PARAMS (in module hydro.legacy.coards) params() (hydro.exchange._ExchangeInfo method) params_idx (hydro.exchange._ExchangeInfo attribute) PathType (in module hydro.accessors) post_data (hydro.exchange._ExchangeInfo property) post_data_slice (hydro.exchange._ExchangeInfo attribute)

Q

QC_SUFFIX (in module hydro.legacy.coards) QUESTIONABLE (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.ExchangeSampleFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeSampleFlag attribute)

R

read_exchange() (in module hydro) (in module hydro.exchange)

rename_with_bookkeeping() (in module hydro.rename)

S

SAFE_COLUMN_WIDTH (in module hydro.legacy.woce) SAMPNO (in module hydro.core) (in module hydro.exchange) set_axis_attrs() (in module hydro.exchange) set_coordinate_encoding_fill() (in module hydro.exchange) set_expected() (hydro.exchange._ExchangeData method) set_original_header() (in module hydro.legacy.coards) setup_logging() (in module hydro.__main__) simple_bottle_exchange() (in module hydro.exchange.helpers) simplest_str() (in module hydro.legacy.coards) (in module hydro.legacy.woce) single_profile (hydro.exchange._ExchangeData attribute)

sort_ds() (in module hydro.exchange) split_profiles() (hydro.exchange._ExchangeData method) stamp (hydro.exchange._ExchangeInfo property) stamp_slice (hydro.exchange._ExchangeInfo attribute) STATIC_PARAMETERS_PER_CAST (in module hydro.legacy.coards) status() (in module hydro.__main__) status_exchange() (in module hydro.__main__) STNNBR (in module hydro.core) (in module hydro.exchange) str_lens() (hydro.exchange._ExchangeData method) strftime_woce_date_time() (in module hydro.legacy.coards) STRLEN (in module hydro.legacy.coards)

T

test_add_profile() (in module hydro.tests.test_core_ops) test_btl_date_time() (in module hydro.tests.test_exchange) test_btl_date_time_missing_warn() (in module hydro.tests.test_exchange) test_create_new() (in module hydro.tests.test_core_ops) test_ctd_nan() (in module hydro.tests.test_exchange) test_duplicate_name_different_units() (in module hydro.tests.test_exchange) test_duplicate_name_same_units() (in module hydro.tests.test_exchange) test_exchange_bottle_round_trip() (in module hydro.tests.test_accessors) test_exchange_ctd_round_trip() (in module hydro.tests.test_accessors) test_file_seperator() (in module hydro.tests.test_exchange) test_fix_bottle_time_span() (in module hydro.tests.test_exchange) test_fq_merge() (in module hydro.tests.test_merge) test_fq_merge_with_error() (in module hydro.tests.test_merge) test_gen_fname_machinery() (in module hydro.tests.test_accessors) test_http_loads() (in module hydro.tests.test_exchange) test_multiple_unknown_params() (in module hydro.tests.test_exchange) test_pressure_flags() (in module hydro.tests.test_exchange)

test_pressure_flags_bad() (in module hydro.tests.test_exchange) test_reject_bad_examples() (in module hydro.tests.test_exchange) test_rename() (in module hydro.tests.test_rename) test_to_argo_variable_names() (in module hydro.tests.test_rename) TIME (in module hydro.core) (in module hydro.exchange) time_names (hydro.accessors.ExchangeAccessor attribute) to_argo_variable_names() (in module hydro.rename) to_coards() (hydro.accessors.LegacyFormatAccessor method) (in module hydro.legacy.coards) to_exchange() (hydro.accessors.ExchangeAccessor method) to_mat() (hydro.accessors.MatlabAccessor method) to_sum() (hydro.accessors.LegacyFormatAccessor method) to_whp_columns() (hydro.accessors.ExchangeAccessor method) to_woce() (hydro.accessors.LegacyFormatAccessor method) (in module hydro.legacy.woce) track (hydro.accessors.GeoAccessor property) truncate_row() (in module hydro.legacy.woce)

U

UNCALIBRATED (hydro.exchange.ExchangeCTDFlag attribute) (hydro.exchange.flags.ExchangeCTDFlag attribute) units() (hydro.exchange._ExchangeInfo method) units_idx (hydro.exchange._ExchangeInfo attribute)

UNKNONW_TIME_FILL (in module hydro.legacy.woce) UNKNOWN (hydro.exchange.ExchangeBottleFlag attribute) (hydro.exchange.flags.ExchangeBottleFlag attribute) (in module hydro.legacy.coards) UNSPECIFIED_UNITS (in module hydro.legacy.coards)

V

validate() (hydro.conformance.CCHDOnetCDF10 method) vars_with_value() (in module hydro.__main__)

version (in module hydro._version) version_from (hydro.migration.MigrationABC attribute)

W

warning (hydro.conformance.CheckResult attribute) WATER_SAMPLE_FLAG_DESCRIPTION (in module hydro.legacy.woce) WATER_SAMPLE_FLAGS (in module hydro.legacy.woce) whp_errors() (hydro.exchange._ExchangeInfo method) whp_flags() (hydro.exchange._ExchangeInfo method) whp_params() (hydro.exchange._ExchangeInfo method) WHPIndxer (class in hydro.accessors) WHPNameAttr (in module hydro.exchange)

WHPNameIndex (in module hydro.exchange) WHPParamUnit (in module hydro.exchange) write_bottle() (in module hydro.legacy.coards) (in module hydro.legacy.woce) write_ctd() (in module hydro.legacy.coards) (in module hydro.legacy.woce) write_data() (in module hydro.legacy.woce) write_or_return() (in module hydro.accessors) writeable_columns() (in module hydro.legacy.woce)