Index

_

__cchdo_version__ (hydro.conformance.CCHDOnetCDF10 attribute) __geo_interface__ (hydro.accessors.CCHDOAccessor property) __getitem__() (hydro.accessors.WHPIndxer method) (hydro.tutorial.CCHDOBottleData method) __iter__() (hydro.tutorial.CCHDOBottleData method) __len__() (hydro.tutorial.CCHDOBottleData method) __post_init__() (hydro.exchange._ExchangeData method) _ascii() (in module hydro.legacy.coards) _cache_dir() (in module hydro.tutorial) _combine_dt_ndarray() (in module hydro.dt) _comment_loader() (in module hydro.__main__) _ctd_get_header() (in module hydro.exchange) _ctd_override (hydro.exchange._ExchangeInfo attribute) _ExchangeData (class in hydro.exchange) _ExchangeInfo (class in hydro.exchange) _EXWOCE_PARAMS (in module hydro.legacy.woce) _flag_definitions (hydro.flags.ExchangeBottleFlag property) (hydro.flags.ExchangeCTDFlag property) (hydro.flags.ExchangeSampleFlag property) _from_exchange_data() (in module hydro.exchange) _gen_fname() (hydro.accessors.CCHDOAccessor static method) _get_comments() (hydro.accessors.CCHDOAccessor method)

_get_fill_locs() (in module hydro.exchange) _get_params() (in module hydro.exchange) _has_no_nones() (in module hydro.exchange) _ignore_columns (hydro.exchange._ExchangeInfo attribute) _is_all_dataarray() (in module hydro.utils) _is_valid_exchange_numeric() (in module hydro.exchange) _load_raw_exchange() (in module hydro.exchange) _make_ctd_headers() (hydro.accessors.CCHDOAccessor method) _make_data_block() (hydro.accessors.CCHDOAccessor method) _make_params_units_line() (hydro.accessors.CCHDOAccessor method) _no_data_flags (hydro.flags.ExchangeBottleFlag property) (hydro.flags.ExchangeCTDFlag property) (hydro.flags.ExchangeSampleFlag property) _np_data_block (hydro.exchange._ExchangeInfo property) _obj (hydro.accessors.CCHDOAccessor attribute) _pad_station_cast() (in module hydro.legacy.coards) (in module hydro.legacy.woce) _raw_lines (hydro.exchange._ExchangeInfo attribute) _transform_whp_to_csv() (in module hydro.exchange) _UNWRITTEN_COLUMNS (in module hydro.legacy.woce) _whp_param_info (hydro.exchange._ExchangeInfo property) _whpname_from_attrs() (hydro.accessors.CCHDOAccessor static method)

A

add_cdom_coordinate() (in module hydro.utils) add_geometry_var() (in module hydro.utils) add_level() (in module hydro.core) add_param() (in module hydro.core) add_profile() (in module hydro.core) add_profile_level() (in module hydro.core)

add_profile_type() (in module hydro.utils) all_same() (in module hydro.utils) ancillary variable ASTERISK_FLAG (in module hydro.legacy.woce) attribute auxiliary coordinate

B

BAD (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute) BAD_TRIP (hydro.flags.ExchangeBottleFlag attribute) BOTTLE (hydro.types.FileType attribute) BOTTLE_FILE_EXTENSION (in module hydro.legacy.woce) BOTTLE_FLAG_DESCRIPTION (in module hydro.legacy.woce)

BOTTLE_FLAGS (in module hydro.legacy.woce) bottle_fname (in module hydro.tutorial) bottle_uri (in module hydro.tutorial) BOTTLE_ZIP_FILE_EXTENSION (in module hydro.legacy.coards) BTLNBR (in module hydro.consts) bytes_via_temp() (in module hydro.legacy.coards)

C

cached_file_loader() (in module hydro.__main__) can_migrate() (hydro.migration.MigrationABC method) cast (hydro.accessors.FQPointKey attribute) (hydro.accessors.FQProfileKey attribute) CASTNO (in module hydro.consts) cchdo_c_format_precision() (hydro.accessors.CCHDOAccessor static method) cchdo_loader() (in module hydro.__main__) CCHDO_VERSION (in module hydro.exchange) CCHDOAccessor (class in hydro.accessors) CCHDOBottleData (class in hydro.tutorial) CCHDOnetCDF (in module hydro.conformance) CCHDOnetCDF10 (class in hydro.conformance) cf_def (hydro.flags.ExchangeFlag property) CHARACTER_PARAMETERS (in module hydro.legacy.woce) check_ancillary_variables() (in module hydro.checks) check_cf_version() (hydro.conformance.CCHDOnetCDF10 method) check_flags() (in module hydro.checks) check_is_subset_shape() (in module hydro.exchange) check_sorted() (in module hydro.checks) CheckOptions (class in hydro.exchange) CheckResult (class in hydro.conformance) CHROMA_IRREGULAR (hydro.flags.ExchangeSampleFlag attribute) CHROMA_MANUAL (hydro.flags.ExchangeSampleFlag attribute) cli (in module hydro.__main__)

COLUMN_WIDTH (in module hydro.legacy.woce) columns_and_base_format() (in module hydro.legacy.woce) combine_bottle_time() (in module hydro.exchange) combine_dt() (in module hydro.dt) comments (hydro.exchange._ExchangeData attribute) (hydro.exchange._ExchangeInfo property) comments_slice (hydro.exchange._ExchangeInfo attribute) compact_profile() (hydro.accessors.CCHDOAccessor method) convert() (in module hydro.__main__) convert_csv() (in module hydro.__main__) convert_exchange() (in module hydro.__main__) convert_fortran_format_to_c() (in module hydro.legacy.woce) coordinate coordinate variables COORDS (in module hydro.consts) create_new() (in module hydro.core) CTD (hydro.types.FileType attribute) CTD_FILE_EXTENSION (in module hydro.legacy.woce) CTD_FLAG_DESCRIPTION (in module hydro.legacy.woce) CTD_FLAGS (in module hydro.legacy.woce) ctd_headers (hydro.exchange._ExchangeInfo property) ctd_headers_slice (hydro.exchange._ExchangeInfo attribute) CTD_ZIP_FILE_EXTENSION (in module hydro.legacy.coards) (in module hydro.legacy.woce) CTDPRS (in module hydro.consts)

D

data (hydro.exchange._ExchangeInfo property) data_slice (hydro.exchange._ExchangeInfo attribute) dataarray_factory() (in module hydro.core) DATABASE (hydro.types.PrecisionSource attribute) dataset DATE (in module hydro.consts) (in module hydro.dt)

date_names (hydro.accessors.CCHDOAccessor attribute) definition (hydro.flags.ExchangeFlag property) DESPIKED (hydro.flags.ExchangeCTDFlag attribute) dimension DIMS (in module hydro.consts) DISCREPANCY (hydro.flags.ExchangeBottleFlag attribute) dtype_map (in module hydro.core)

E

edit() (in module hydro.__main__) edit_comments() (in module hydro.__main__) elapsed_time_names (hydro.accessors.CCHDOAccessor attribute) EPOCH (in module hydro.legacy.coards) error (hydro.conformance.CheckResult attribute) error_cols (hydro.exchange._ExchangeData attribute) error_data (hydro.exchange.exceptions.ExchangeDataFlagPairError attribute) (hydro.exchange.exceptions.ExchangeParameterUndefError attribute) ERROR_NAME (in module hydro.accessors) error_precisions (hydro.exchange._ExchangeData attribute) ExchangeBOMError ExchangeBottleFlag (class in hydro.flags) ExchangeCTDFlag (class in hydro.flags) ExchangeDataColumnAlignmentError ExchangeDataError ExchangeDataFlagPairError ExchangeDataInconsistentCoordinateError ExchangeDataPartialCoordinateError ExchangeDataPartialKeyError ExchangeDuplicateKeyError ExchangeDuplicateParameterError

ExchangeEncodingError ExchangeEndDataError ExchangeError ExchangeFlag (class in hydro.flags) ExchangeFlaglessParameterError ExchangeFlagUnitError ExchangeInconsistentMergeType ExchangeIO (in module hydro.exchange) ExchangeLEError ExchangeMagicNumberError ExchangeOrphanErrorError ExchangeOrphanFlagError ExchangeParameterError ExchangeParameterUndefError ExchangeParameterUnitAlignmentError ExchangeRecursiveZip ExchangeSampleFlag (class in hydro.flags) exp_stn_cast (in module hydro.tests.test_accessors) expocode (hydro.accessors.FQPointKey attribute) (hydro.accessors.FQProfileKey attribute) EXPOCODE (in module hydro.consts) extract_numeric_precisions() (in module hydro.utils)

F

FILE (hydro.types.PrecisionSource attribute) FILE_EXTENSION (in module hydro.legacy.coards) file_type (hydro.accessors.CCHDOAccessor property) FileType (class in hydro.types) FileTypes (in module hydro.types) FileTypeType (in module hydro.types) FILL_VALUE (in module hydro.legacy.coards) (in module hydro.legacy.woce) FILLS_MAP (in module hydro.consts) finalize() (hydro.exchange._ExchangeInfo method) finalize_ancillary_variables() (in module hydro.exchange) flag (hydro.flags.ExchangeFlag attribute)

flag_cols (hydro.exchange._ExchangeData attribute) flag_description() (in module hydro.legacy.woce) FLAG_NAME (in module hydro.accessors) FLAG_SCHEME (in module hydro.core) (in module hydro.exchange) flags (hydro.exchange.CheckOptions attribute) flatten_cdom_coordinate() (in module hydro.utils) FORMAT (in module hydro.conformance) fq_get_precisions() (in module hydro.accessors) FQPointKey (class in hydro.accessors) FQProfileKey (class in hydro.accessors) from_lines() (hydro.exchange._ExchangeInfo class method) FTypeOptions (in module hydro.accessors)

G

gen_fname() (hydro.accessors.CCHDOAccessor method) gen_template() (in module hydro.exchange.helpers) GEOMETRY_VARS (in module hydro.consts) get_coards_global_attributes() (in module hydro.legacy.coards) get_common_variables() (in module hydro.legacy.coards) get_dataarrays() (in module hydro.legacy.coards)

get_exwoce_params() (in module hydro.legacy.woce) get_filename() (in module hydro.legacy.coards) (in module hydro.legacy.woce) GOOD (hydro.flags.ExchangeBottleFlag attribute) (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute) group

H

has_value (hydro.flags.ExchangeFlag property) hydro module hydro.__main__ module hydro.__main_helpers module hydro.accessors module hydro.checks module hydro.conformance module hydro.consts module hydro.convert module hydro.core module hydro.dt module hydro.exchange module hydro.exchange.exceptions module hydro.exchange.helpers module hydro.flags module hydro.legacy module hydro.legacy.coards module hydro.legacy.woce module

hydro.migration module hydro.rename module hydro.sorting module hydro.tests module hydro.tests.conftest module hydro.tests.data module hydro.tests.test_accessors module hydro.tests.test_checks module hydro.tests.test_core_ops module hydro.tests.test_csv module hydro.tests.test_exchange module hydro.tests.test_legacy module hydro.tests.test_merge module hydro.tests.test_rename module hydro.tutorial module hydro.types module hydro.utils module

I

INTERPOLATED (hydro.flags.ExchangeCTDFlag attribute) is_not_none() (in module hydro.rename) (in module hydro.tests.test_rename)

iter_errors() (hydro.conformance.CCHDOnetCDF10 method)

J

jsonld() (hydro.accessors.CCHDOAccessor method)

L

LATITUDE (in module hydro.consts) LEAKING (hydro.flags.ExchangeBottleFlag attribute) load_cchdo_bottle_data() (in module hydro.tutorial) log (in module hydro.__main__) (in module hydro.conformance) (in module hydro.exchange) (in module hydro.legacy.coards)

LONGITUDE (in module hydro.consts)

M

make_netcdf_file_json() (in module hydro.__main_helpers) MEAN (hydro.flags.ExchangeSampleFlag attribute) merge_fq() (hydro.accessors.CCHDOAccessor method) migrate() (hydro.migration.MigrationABC method) MigrationABC (class in hydro.migration) minutes_since_epoch() (in module hydro.legacy.coards) MISSING (hydro.flags.ExchangeSampleFlag attribute) module hydro hydro.__main__ hydro.__main_helpers hydro.accessors hydro.checks hydro.conformance hydro.consts hydro.convert hydro.core hydro.dt hydro.exchange hydro.exchange.exceptions hydro.exchange.helpers hydro.flags hydro.legacy hydro.legacy.coards hydro.legacy.woce hydro.migration hydro.rename hydro.sorting hydro.tests hydro.tests.conftest hydro.tests.data hydro.tests.test_accessors hydro.tests.test_checks hydro.tests.test_core_ops hydro.tests.test_csv hydro.tests.test_exchange hydro.tests.test_legacy hydro.tests.test_merge hydro.tests.test_rename hydro.tutorial hydro.types hydro.utils

N

n_level (hydro.accessors.WHPIndxer attribute) n_prof (hydro.accessors.WHPIndxer attribute) nc_empty() (in module hydro.tests.conftest) nc_placeholder() (in module hydro.tests.conftest) nc_placeholders() (in module hydro.tests.conftest) NO_INFO (hydro.flags.ExchangeBottleFlag attribute) NOFLAG (hydro.flags.ExchangeBottleFlag attribute) (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute)

NON_FLOAT_PARAMETERS (in module hydro.legacy.coards) normalize_fq() (in module hydro.accessors) NormalizedFQ (in module hydro.accessors) NOT_REPORTED (hydro.flags.ExchangeBottleFlag attribute) (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute) NOT_SAMPLED (hydro.flags.ExchangeBottleFlag attribute) (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute)

O

ok (hydro.conformance.CheckResult property)

P

p_file() (in module hydro.__main_helpers) p_file_cf() (in module hydro.__main_helpers) PAIR (hydro.flags.ExchangeBottleFlag attribute) param_cols (hydro.exchange._ExchangeData attribute) param_precisions (hydro.exchange._ExchangeData attribute) params (hydro.exchange._ExchangeInfo property) PARAMS (in module hydro.legacy.coards) params_idx (hydro.exchange._ExchangeInfo attribute)

path (hydro.tutorial.CCHDOBottleData attribute) PathType (in module hydro.accessors) post_data (hydro.exchange._ExchangeInfo property) post_data_slice (hydro.exchange._ExchangeInfo attribute) PrecisionSouceType (in module hydro.__main__) PrecisionSource (class in hydro.types) PrecisionSources (in module hydro.types) PrecisionSourceType (in module hydro.types)

Q

QC_SUFFIX (in module hydro.legacy.coards)

QUESTIONABLE (hydro.flags.ExchangeCTDFlag attribute) (hydro.flags.ExchangeSampleFlag attribute)

R

read_csv() (in module hydro) (in module hydro.exchange) read_exchange() (in module hydro) (in module hydro.exchange)

remove_param() (in module hydro.core) rename_with_bookkeeping() (in module hydro.rename)

S

SAFE_COLUMN_WIDTH (in module hydro.legacy.woce) sample (hydro.accessors.FQPointKey attribute) SAMPNO (in module hydro.consts) SENTINEL_PARAM (in module hydro.exchange) SENTINEL_PREFIX (in module hydro.exchange) set_axis_attrs() (in module hydro.utils) set_coordinate_encoding_fill() (in module hydro.utils) set_expected() (hydro.exchange._ExchangeData method) setup_logging() (in module hydro.__main__) simple_bottle_exchange() (in module hydro.exchange.helpers) simplest_str() (in module hydro.legacy.coards) (in module hydro.legacy.woce) single_profile (hydro.exchange._ExchangeData attribute)

sort_ds() (in module hydro.sorting) split_profiles() (hydro.exchange._ExchangeData method) stamp (hydro.exchange._ExchangeInfo property) stamp_slice (hydro.exchange._ExchangeInfo attribute) STATIC_PARAMETERS_PER_CAST (in module hydro.legacy.coards) station (hydro.accessors.FQPointKey attribute) (hydro.accessors.FQProfileKey attribute) status() (in module hydro.__main__) status_cf_derived() (in module hydro.__main__) status_exchange() (in module hydro.__main__) STNNBR (in module hydro.consts) str_lens (hydro.exchange._ExchangeData property) strftime_woce_date_time() (in module hydro.legacy.coards) STRLEN (in module hydro.legacy.coards)

T

test_add_param() (in module hydro.tests.test_core_ops) test_add_param_cdom() (in module hydro.tests.test_core_ops) test_add_profile() (in module hydro.tests.test_core_ops) test_all_error_params() (in module hydro.tests.test_csv) test_all_flags_kept() (in module hydro.tests.test_csv) test_alternate_encoding() (in module hydro.tests.test_exchange) test_alternate_params() (in module hydro.tests.test_exchange) test_alternate_params_flags() (in module hydro.tests.test_exchange) test_btl_date_time() (in module hydro.tests.test_exchange) test_btl_date_time_fill_round_trip() (in module hydro.tests.test_exchange) test_btl_date_time_missing_warn() (in module hydro.tests.test_exchange) test_check_ancillary_variables_ok() (in module hydro.tests.test_checks) test_check_ancillary_variables_referenced_non_extant_var() (in module hydro.tests.test_checks) test_check_ancillary_variables_unreferenced_vars() (in module hydro.tests.test_checks) test_coards_bottle_flag_9() (in module hydro.tests.test_accessors) test_coards_ctdnobs_with_missing() (in module hydro.tests.test_accessors) test_coards_no_comments() (in module hydro.tests.test_accessors) test_coards_with_param_containing_slash() (in module hydro.tests.test_accessors) test_create_new() (in module hydro.tests.test_core_ops) test_ctd_nan() (in module hydro.tests.test_exchange) test_ctdetime_preserve_precision() (in module hydro.tests.test_accessors) test_duplicate_name_different_units() (in module hydro.tests.test_exchange) test_duplicate_name_different_units_keep_flags() (in module hydro.tests.test_exchange) test_duplicate_name_same_units() (in module hydro.tests.test_exchange) test_empty_string_data() (in module hydro.tests.test_exchange) test_exchange_bottle_round_trip() (in module hydro.tests.test_accessors) test_exchange_bottle_round_trip_cdom() (in module hydro.tests.test_accessors) test_exchange_bottle_round_trip_with_alt() (in module hydro.tests.test_accessors) test_exchange_ctd_round_trip() (in module hydro.tests.test_accessors) test_file_seperator() (in module hydro.tests.test_exchange) test_fix_bottle_time_span() (in module hydro.tests.test_exchange) test_fq_merge() (in module hydro.tests.test_merge) test_fq_merge_cdom() (in module hydro.tests.test_merge) test_fq_merge_flag_error() (in module hydro.tests.test_merge) test_fq_merge_flag_only() (in module hydro.tests.test_merge)

test_fq_merge_with_alt_params() (in module hydro.tests.test_merge) test_fq_merge_with_error() (in module hydro.tests.test_merge) test_gen_fname_machinery() (in module hydro.tests.test_accessors) test_http_loads() (in module hydro.tests.test_exchange) test_ignore_columns() (in module hydro.tests.test_csv) test_multiple_unknown_params() (in module hydro.tests.test_exchange) test_multiple_unknown_params_flag() (in module hydro.tests.test_exchange) test_multiple_unknown_params_ignore() (in module hydro.tests.test_exchange) test_nc_serialize_all_ctd() (in module hydro.tests.test_accessors) test_nc_serialize_all_ctdetime() (in module hydro.tests.test_accessors) test_nc_serialize_all_ctdetime_multiple_profs() (in module hydro.tests.test_accessors) test_pressure_flags() (in module hydro.tests.test_exchange) test_pressure_flags_bad() (in module hydro.tests.test_exchange) test_read_csv() (in module hydro.tests.test_csv) test_reject_bad_examples() (in module hydro.tests.test_exchange) test_remove_param() (in module hydro.tests.test_core_ops) test_rename() (in module hydro.tests.test_rename) test_station_ids() (in module hydro.tests.test_csv) test_to_argo_variable_names() (in module hydro.tests.test_rename) test_woce_ctd_no_flags() (in module hydro.tests.test_accessors) test_woce_flag_defs() (in module hydro.tests.test_legacy) TIME (in module hydro.consts) (in module hydro.dt) time_names (hydro.accessors.CCHDOAccessor attribute) to_argo_variable_names() (in module hydro.rename) to_coards() (hydro.accessors.CCHDOAccessor method) (in module hydro.legacy.coards) to_exchange() (hydro.accessors.CCHDOAccessor method) to_mat() (hydro.accessors.CCHDOAccessor method) to_sum() (hydro.accessors.CCHDOAccessor method) to_whp_columns() (hydro.accessors.CCHDOAccessor method) to_woce() (hydro.accessors.CCHDOAccessor method) (in module hydro.legacy.woce) track (hydro.accessors.CCHDOAccessor property) truncate_row() (in module hydro.legacy.woce)

U

UNCALIBRATED (hydro.flags.ExchangeCTDFlag attribute) units (hydro.exchange._ExchangeInfo property) units_idx (hydro.exchange._ExchangeInfo attribute)

UNKNONW_TIME_FILL (in module hydro.legacy.woce) UNKNOWN (hydro.flags.ExchangeBottleFlag attribute) (in module hydro.legacy.coards) UNSPECIFIED_UNITS (in module hydro.legacy.coards)

V

validate() (hydro.conformance.CCHDOnetCDF10 method) variable

vars_with_value() (in module hydro.__main__) version_from (hydro.migration.MigrationABC attribute)

W

warning (hydro.conformance.CheckResult attribute) WATER_SAMPLE_FLAG_DESCRIPTION (in module hydro.legacy.woce) WATER_SAMPLE_FLAGS (in module hydro.legacy.woce) whp_errors (hydro.exchange._ExchangeInfo property) whp_flags (hydro.exchange._ExchangeInfo property) whp_params (hydro.exchange._ExchangeInfo property) WHPIndxer (class in hydro.accessors) WHPNameAttr (in module hydro.types)

WHPNameIndex (in module hydro.exchange) WHPParamUnit (in module hydro.exchange) write_bottle() (in module hydro.legacy.coards) (in module hydro.legacy.woce) write_ctd() (in module hydro.legacy.coards) (in module hydro.legacy.woce) write_data() (in module hydro.legacy.woce) write_or_return() (in module hydro.accessors) writeable_columns() (in module hydro.legacy.woce)